--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/bin/unboxify Fri Nov 03 10:12:49 2023 -0400
@@ -0,0 +1,20 @@
+#!/usr/bin/env python3
+
+import sys
+
+for line in sys.stdin:
+ for ch in line:
+ sys.stdout.write({
+ '┤': '+',
+ '├': '+',
+ '┴': '+',
+ '┬': '+',
+ '┼': '+',
+ '└': '+',
+ '┘': '+',
+ '┐': '+',
+ '┌': '+',
+ '│': '|',
+ '—': '-',
+ }.get(ch, ch))
+
--- a/remote/bash_profile Wed Oct 25 22:46:40 2023 -0400
+++ b/remote/bash_profile Fri Nov 03 10:12:49 2023 -0400
@@ -101,3 +101,8 @@
export GPG_TTY
export EDITOR=vim
+
+export _Z_CMD=j
+export _Z_DATA=$HOME/.z-bash
+
+. $HOME/src/dotfiles/z.sh
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/remote/z.sh Fri Nov 03 10:12:49 2023 -0400
@@ -0,0 +1,267 @@
+# Copyright (c) 2009 rupa deadwyler. Licensed under the WTFPL license, Version 2
+
+# maintains a jump-list of the directories you actually use
+#
+# INSTALL:
+# * put something like this in your .bashrc/.zshrc:
+# . /path/to/z.sh
+# * cd around for a while to build up the db
+# * PROFIT!!
+# * optionally:
+# set $_Z_CMD in .bashrc/.zshrc to change the command (default z).
+# set $_Z_DATA in .bashrc/.zshrc to change the datafile (default ~/.z).
+# set $_Z_MAX_SCORE lower to age entries out faster (default 9000).
+# set $_Z_NO_RESOLVE_SYMLINKS to prevent symlink resolution.
+# set $_Z_NO_PROMPT_COMMAND if you're handling PROMPT_COMMAND yourself.
+# set $_Z_EXCLUDE_DIRS to an array of directories to exclude.
+# set $_Z_OWNER to your username if you want use z while sudo with $HOME kept
+#
+# USE:
+# * z foo # cd to most frecent dir matching foo
+# * z foo bar # cd to most frecent dir matching foo and bar
+# * z -r foo # cd to highest ranked dir matching foo
+# * z -t foo # cd to most recently accessed dir matching foo
+# * z -l foo # list matches instead of cd
+# * z -e foo # echo the best match, don't cd
+# * z -c foo # restrict matches to subdirs of $PWD
+# * z -x # remove the current directory from the datafile
+# * z -h # show a brief help message
+
+[ -d "${_Z_DATA:-$HOME/.z}" ] && {
+ echo "ERROR: z.sh's datafile (${_Z_DATA:-$HOME/.z}) is a directory."
+}
+
+_z() {
+
+ local datafile="${_Z_DATA:-$HOME/.z}"
+
+ # if symlink, dereference
+ [ -h "$datafile" ] && datafile=$(readlink "$datafile")
+
+ # bail if we don't own ~/.z and $_Z_OWNER not set
+ [ -z "$_Z_OWNER" -a -f "$datafile" -a ! -O "$datafile" ] && return
+
+ _z_dirs () {
+ [ -f "$datafile" ] || return
+
+ local line
+ while read line; do
+ # only count directories
+ [ -d "${line%%\|*}" ] && echo "$line"
+ done < "$datafile"
+ return 0
+ }
+
+ # add entries
+ if [ "$1" = "--add" ]; then
+ shift
+
+ # $HOME and / aren't worth matching
+ [ "$*" = "$HOME" -o "$*" = '/' ] && return
+
+ # don't track excluded directory trees
+ if [ ${#_Z_EXCLUDE_DIRS[@]} -gt 0 ]; then
+ local exclude
+ for exclude in "${_Z_EXCLUDE_DIRS[@]}"; do
+ case "$*" in "$exclude"*) return;; esac
+ done
+ fi
+
+ # maintain the data file
+ local tempfile="$datafile.$RANDOM"
+ local score=${_Z_MAX_SCORE:-9000}
+ _z_dirs | awk -v path="$*" -v now="$(date +%s)" -v score=$score -F"|" '
+ BEGIN {
+ rank[path] = 1
+ time[path] = now
+ }
+ $2 >= 1 {
+ # drop ranks below 1
+ if( $1 == path ) {
+ rank[$1] = $2 + 1
+ time[$1] = now
+ } else {
+ rank[$1] = $2
+ time[$1] = $3
+ }
+ count += $2
+ }
+ END {
+ if( count > score ) {
+ # aging
+ for( x in rank ) print x "|" 0.99*rank[x] "|" time[x]
+ } else for( x in rank ) print x "|" rank[x] "|" time[x]
+ }
+ ' 2>/dev/null >| "$tempfile"
+ # do our best to avoid clobbering the datafile in a race condition.
+ if [ $? -ne 0 -a -f "$datafile" ]; then
+ env rm -f "$tempfile"
+ else
+ [ "$_Z_OWNER" ] && chown $_Z_OWNER:"$(id -ng $_Z_OWNER)" "$tempfile"
+ env mv -f "$tempfile" "$datafile" || env rm -f "$tempfile"
+ fi
+
+ # tab completion
+ elif [ "$1" = "--complete" -a -s "$datafile" ]; then
+ _z_dirs | awk -v q="$2" -F"|" '
+ BEGIN {
+ q = substr(q, 3)
+ if( q == tolower(q) ) imatch = 1
+ gsub(/ /, ".*", q)
+ }
+ {
+ if( imatch ) {
+ if( tolower($1) ~ q ) print $1
+ } else if( $1 ~ q ) print $1
+ }
+ ' 2>/dev/null
+
+ else
+ # list/go
+ local echo fnd last list opt typ
+ while [ "$1" ]; do case "$1" in
+ --) while [ "$1" ]; do shift; fnd="$fnd${fnd:+ }$1";done;;
+ -*) opt=${1:1}; while [ "$opt" ]; do case ${opt:0:1} in
+ c) fnd="^$PWD $fnd";;
+ e) echo=1;;
+ h) echo "${_Z_CMD:-z} [-cehlrtx] args" >&2; return;;
+ l) list=1;;
+ r) typ="rank";;
+ t) typ="recent";;
+ x) sed -i -e "\:^${PWD}|.*:d" "$datafile";;
+ esac; opt=${opt:1}; done;;
+ *) fnd="$fnd${fnd:+ }$1";;
+ esac; last=$1; [ "$#" -gt 0 ] && shift; done
+ [ "$fnd" -a "$fnd" != "^$PWD " ] || list=1
+
+ # if we hit enter on a completion just go there
+ case "$last" in
+ # completions will always start with /
+ /*) [ -z "$list" -a -d "$last" ] && builtin cd "$last" && return;;
+ esac
+
+ # no file yet
+ [ -f "$datafile" ] || return
+
+ local cd
+ cd="$( < <( _z_dirs ) awk -v t="$(date +%s)" -v list="$list" -v typ="$typ" -v q="$fnd" -F"|" '
+ function frecent(rank, time) {
+ # relate frequency and time
+ dx = t - time
+ return int(10000 * rank * (3.75/((0.0001 * dx + 1) + 0.25)))
+ }
+ function output(matches, best_match, common) {
+ # list or return the desired directory
+ if( list ) {
+ if( common ) {
+ printf "%-10s %s\n", "common:", common > "/dev/stderr"
+ }
+ cmd = "sort -n >&2"
+ for( x in matches ) {
+ if( matches[x] ) {
+ printf "%-10s %s\n", matches[x], x | cmd
+ }
+ }
+ } else {
+ if( common && !typ ) best_match = common
+ print best_match
+ }
+ }
+ function common(matches) {
+ # find the common root of a list of matches, if it exists
+ for( x in matches ) {
+ if( matches[x] && (!short || length(x) < length(short)) ) {
+ short = x
+ }
+ }
+ if( short == "/" ) return
+ for( x in matches ) if( matches[x] && index(x, short) != 1 ) {
+ return
+ }
+ return short
+ }
+ BEGIN {
+ gsub(" ", ".*", q)
+ hi_rank = ihi_rank = -9999999999
+ }
+ {
+ if( typ == "rank" ) {
+ rank = $2
+ } else if( typ == "recent" ) {
+ rank = $3 - t
+ } else rank = frecent($2, $3)
+ if( $1 ~ q ) {
+ matches[$1] = rank
+ } else if( tolower($1) ~ tolower(q) ) imatches[$1] = rank
+ if( matches[$1] && matches[$1] > hi_rank ) {
+ best_match = $1
+ hi_rank = matches[$1]
+ } else if( imatches[$1] && imatches[$1] > ihi_rank ) {
+ ibest_match = $1
+ ihi_rank = imatches[$1]
+ }
+ }
+ END {
+ # prefer case sensitive
+ if( best_match ) {
+ output(matches, best_match, common(matches))
+ exit
+ } else if( ibest_match ) {
+ output(imatches, ibest_match, common(imatches))
+ exit
+ }
+ exit(1)
+ }
+ ')"
+
+ if [ "$?" -eq 0 ]; then
+ if [ "$cd" ]; then
+ if [ "$echo" ]; then echo "$cd"; else builtin cd "$cd"; fi
+ fi
+ else
+ return $?
+ fi
+ fi
+}
+
+alias ${_Z_CMD:-z}='_z 2>&1'
+
+[ "$_Z_NO_RESOLVE_SYMLINKS" ] || _Z_RESOLVE_SYMLINKS="-P"
+
+if type compctl >/dev/null 2>&1; then
+ # zsh
+ [ "$_Z_NO_PROMPT_COMMAND" ] || {
+ # populate directory list, avoid clobbering any other precmds.
+ if [ "$_Z_NO_RESOLVE_SYMLINKS" ]; then
+ _z_precmd() {
+ (_z --add "${PWD:a}" &)
+ : $RANDOM
+ }
+ else
+ _z_precmd() {
+ (_z --add "${PWD:A}" &)
+ : $RANDOM
+ }
+ fi
+ [[ -n "${precmd_functions[(r)_z_precmd]}" ]] || {
+ precmd_functions[$(($#precmd_functions+1))]=_z_precmd
+ }
+ }
+ _z_zsh_tab_completion() {
+ # tab completion
+ local compl
+ read -l compl
+ reply=(${(f)"$(_z --complete "$compl")"})
+ }
+ compctl -U -K _z_zsh_tab_completion _z
+elif type complete >/dev/null 2>&1; then
+ # bash
+ # tab completion
+ complete -o filenames -C '_z --complete "$COMP_LINE"' ${_Z_CMD:-z}
+ [ "$_Z_NO_PROMPT_COMMAND" ] || {
+ # populate directory list. avoid clobbering other PROMPT_COMMANDs.
+ grep "_z --add" <<< "$PROMPT_COMMAND" >/dev/null || {
+ PROMPT_COMMAND="$PROMPT_COMMAND"$'\n''(_z --add "$(command pwd '$_Z_RESOLVE_SYMLINKS' 2>/dev/null)" 2>/dev/null &);'
+ }
+ }
+fi
--- a/vim/custom-dictionary.utf-8.add Wed Oct 25 22:46:40 2023 -0400
+++ b/vim/custom-dictionary.utf-8.add Fri Nov 03 10:12:49 2023 -0400
@@ -354,3 +354,4 @@
retrotransposon
transposon
retrotransposons
+wildcard
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/vim/ftplugin/nextflow/folding.vim Fri Nov 03 10:12:49 2023 -0400
@@ -0,0 +1,16 @@
+setlocal foldmethod=expr
+setlocal foldexpr=GetNextflowFold(v:lnum)
+
+function! GetNextflowFold(lnum)
+ let line = getline(a:lnum)
+
+ if line =~ '^\S.*{$'
+ return '>1'
+ elseif line =~ '^}$'
+ return '<1'
+ elseif line =~ '^\S'
+ return 0
+ else
+ return "="
+ end
+endfunction
--- a/vim/vimrc Wed Oct 25 22:46:40 2023 -0400
+++ b/vim/vimrc Fri Nov 03 10:12:49 2023 -0400
@@ -1128,6 +1128,15 @@
augroup END
" }}}
+" NextFlow {{{
+
+augroup ft_nextflow
+ au!
+
+ " au BufRead,BufNewFile *.nf set ft=groovy
+augroup END
+
+" }}}
" Nginx {{{
augroup ft_nginx
@@ -1334,6 +1343,7 @@
vmap -< ++<
vmap -^ ++^
vmap -V ++v
+vmap -- +-
" }}}
" Clam {{{