bin/fastq-grep @ 502c03ce389d

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author Steve Losh <steve@stevelosh.com>
date Thu, 04 Dec 2025 10:15:30 -0500
parents afc77c6b25b1
children (none)
#!/usr/bin/env bash

set -euo pipefail

fastq="$1"; shift
pattern="^@($(echo "$@" | tr ' ' '|' | tr -d '\n'))"

grep -A3 -P "$pattern" "$fastq" | grep -P -v '^--$'