bin/fastq-grep @ afc77c6b25b1 default tip

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author Steve Losh <steve@stevelosh.com>
date Mon, 01 Dec 2025 13:10:26 -0500
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#!/usr/bin/env bash

set -euo pipefail

fastq="$1"; shift
pattern="^@($(echo "$@" | tr ' ' '|' | tr -d '\n'))"

grep -A3 -P "$pattern" "$fastq" | grep -P -v '^--$'