--- a/README.markdown Mon Sep 18 16:48:51 2023 -0400
+++ b/README.markdown Tue Sep 19 14:32:39 2023 -0400
@@ -519,8 +519,6 @@
Note to self: I can probably use the text-mode VPN UI now that I've got the 2FA
sorted out, and maybe remove the webkit crap I installed for it originally.
-See lab notebook.
-
Finished BS521 lab 0. Wasn't too bad once I shaved the tidyverse yak. Getting
it written up with Latex required more Latex derusting, this time for code
listings and images (pulled some of this from the MS thesis). First, preamble
@@ -629,8 +627,6 @@
let me log in, so I think I can probably ditch the webkit crap I installed for
the graphical thing.
-See lab notebook.
-
Desktop machine wouldn't take input from my USB hub all of a sudden. Found some
bullshit in the logs, probably not worth debugging Yet More Linux Jank if I'm
just going to wipe this machine and install Debian on it soon anyway. Tried to
@@ -667,8 +663,6 @@
HG545 discussion. This paper was pretty straightforward.
-Lab. See lab notebook.
-
Met with PIBS peer mentor.
HG545 second paper was posted, need to do an initial read of that tonight.
@@ -712,8 +706,6 @@
Doing Yet Another Round of Paperwork for the VA. So much red tape. Did what
I could here, but there's a bunch I can't do until I get home after class today.
-See lab notebook.
-
So far I'm loving the look of the stumpwm config changes I made the other day.
Shouldn't have waited this long to clean things up. TODO: use
`select-from-menu` to implement a better screen-switching shortcut in stump.
@@ -824,8 +816,6 @@
extremely long and I already have enough red tape to deal with through the VA,
so I'm not going to add more paperwork for myself. Oh well.
-See lab notebook.
-
Met with John Prensner about possibly rotating in his lab. Next steps for
rotations are pretty clearly to set up some chats with his students and some
from Boyle/Parker labs to make a choice for the next 1-2 slots. I'll try to do
@@ -852,14 +842,10 @@
Started reaching out to set up chats with folks in a few labs I might be
interested in for my next rotation.
-See lab notebook.
-
## 2023-09-15
HG545 this morning.
-See lab notebook.
-
## 2023-09-16
BS521 reading.
@@ -912,8 +898,6 @@
But at least it works properly now and won't drive me crazy.
-See lab notebook.
-
Did a bit more font hunting. Looking for something to use for figures that
looks plotter-esque, but isn't something with a couple of scattered glyphs and
no weights like the plotter fonts I've found. Licensing is a minefield, but
@@ -929,8 +913,6 @@
Did the reading for BS521 for the next two weeks.
-See lab notebook.
-
Finished BS521 homework 3.
## 2023-09-18
@@ -940,4 +922,30 @@
Chatted with someone about one of the labs I'm thinking about rotating in.
-See lab notebook.
+Cleaned up HW2 for HG545 a bit. Still not done, but at least I'm getting it
+into shape.
+
+## 2023-09-19
+
+BS521.
+
+Meeting with two more grad students to chat about their labs.
+
+BI500.
+
+DCMB has full time IT staff: `DCMB-IT-Services@umich.edu`. Might email them
+about Ethernet connection?
+
+Chat widget on <https://michmed.service-now.com/sp> is a decent way to get help.
+Also walk-in help in THSL 4020. ARC support: <arc-support@umich.edu>.
+
+Slurm tutorial. Learned a couple of interesting things:
+
+* `sq` is an alias for `squeue --me`. Nice.
+* `my_job_header` can help debug weird Slurm shit, handy.
+* Emails will include core/mem high-water marks. Need to figure out if I can
+ get this programatically, might be more accurate than the Snakemake benchmarks
+ (or at least worth comparing).
+
+Chatted about Boyle lab with a current grad student.
+