Clean up the FASTA and buffering utils
author |
Steve Losh <steve@stevelosh.com> |
date |
Sat, 03 Nov 2018 12:45:52 -0400 |
parents |
bd06f66ba88f |
children |
11df545d1a41 |
(in-package :rosalind)
;; A sequence is an ordered collection of objects (usually numbers), which are
;; allowed to repeat. Sequences can be finite or infinite. Two examples are the
;; finite sequence (π,−2–√,0,π) and the infinite sequence of odd numbers
;; (1,3,5,7,9,…). We use the notation an to represent the n-th term of
;; a sequence.
;;
;; A recurrence relation is a way of defining the terms of a sequence with
;; respect to the values of previous terms. In the case of Fibonacci's rabbits
;; from the introduction, any given month will contain the rabbits that were
;; alive the previous month, plus any new offspring. A key observation is that
;; the number of offspring in any month is equal to the number of rabbits that
;; were alive two months prior. As a result, if Fn represents the number of
;; rabbit pairs alive after the n-th month, then we obtain the Fibonacci
;; sequence having terms Fn that are defined by the recurrence relation
;; Fn=Fn−1+Fn−2 (with F1=F2=1 to initiate the sequence). Although the sequence
;; bears Fibonacci's name, it was known to Indian mathematicians over two
;; millennia ago.
;;
;; When finding the n-th term of a sequence defined by a recurrence relation, we
;; can simply use the recurrence relation to generate terms for progressively
;; larger values of n. This problem introduces us to the computational technique
;; of dynamic programming, which successively builds up solutions by using the
;; answers to smaller cases.
;;
;; Given: Positive integers n≤40 and k≤5
;;
;; Return: The total number of rabbit pairs that will be present after n months,
;; if we begin with 1 pair and in each generation, every pair of
;; reproduction-age rabbits produces a litter of k rabbit pairs (instead of only
;; 1 pair).
(define-problem fib (data stream)
"5 3"
"19"
(let ((months (read data))
(litter-size (read data)))
;; The problem description is written incorrectly. They say "total number
;; of rabbit pairs … after n months", but if we list out the values for
;; their sample parameters, we can see their answer is wrong:
;;
;; MONTHS | BREEDING | TOTAL
;; ELAPSED | PAIRS | PAIRS
;; ---------------------------
;; 0 | 0 | 1
;; 1 | 1 | 1
;; 2 | 1 | 4
;; 3 | 4 | 7
;; 4 | 7 | 19 <-- their answer
;; 5 | 19 | 40 <-- actual answer
;;
;; Their problem is they're treating the Fibonacci numbers Fₙ as "number
;; of rabbits after n months", but really Fₙ means "number of rabbits at
;; the beginning of the nth (ordinal) month". This can even be seen in
;; their own diagram at the top of the page -- months 1 and 2 both have
;; 1 pair each. If we start in month 1, and let 2 months elapse, we end up
;; at F₃, not F₂.
;;
;; So we'll just decrement months by one. Sigh.
(iterate
(with breeding = 0)
(with total = 1)
(repeat (1- months))
(psetf breeding total
total (+ total (* breeding litter-size)))
(finally (return total)))))
;; (problem-fib "5 3")
;; (solve fib)