Two more.
| author |
Steve Losh <steve@stevelosh.com> |
| date |
Mon, 12 Nov 2012 13:02:38 -0500 |
| parents |
(none) |
| children |
(none) |
(ns rosalind.p008
(:require [clojure.string :as s]))
(def sample "AUGGCCAUGGCGCCCAGAACUGAGAUCAAUAGUACCCGUAUUAACGGGUGA")
(def acid
{"UUU" \F
"CUU" \L
"AUU" \I
"GUU" \V
"UUC" \F
"CUC" \L
"AUC" \I
"GUC" \V
"UUA" \L
"CUA" \L
"AUA" \I
"GUA" \V
"UUG" \L
"CUG" \L
"AUG" \M
"GUG" \V
"UCU" \S
"CCU" \P
"ACU" \T
"GCU" \A
"UCC" \S
"CCC" \P
"ACC" \T
"GCC" \A
"UCA" \S
"CCA" \P
"ACA" \T
"GCA" \A
"UCG" \S
"CCG" \P
"ACG" \T
"GCG" \A
"UAU" \Y
"CAU" \H
"AAU" \N
"GAU" \D
"UAC" \Y
"CAC" \H
"AAC" \N
"GAC" \D
"UAA" nil
"CAA" \Q
"AAA" \K
"GAA" \E
"UAG" nil
"CAG" \Q
"AAG" \K
"GAG" \E
"UGU" \C
"CGU" \R
"AGU" \S
"GGU" \G
"UGC" \C
"CGC" \R
"AGC" \S
"GGC" \G
"UGA" nil
"CGA" \R
"AGA" \R
"GGA" \G
"UGG" \W
"CGG" \R
"AGG" \R
"GGG" \G})
(defn solve [s]
(println (->> s
s/trim
(partition 3)
(map s/join)
(map acid)
s/join)))
(solve sample)
(solve (slurp "/Users/sjl/Downloads/rosalind_prot.txt"))