# HG changeset patch # User Steve Losh # Date 1699205855 18000 # Node ID 26d94a234232b1c5dd827f7a8edec845f92bf896 # Parent 702c8cb7093eca2a35fb6eb0b16538e7c936c943 Remove second firing model diff -r 702c8cb7093e -r 26d94a234232 tornado-plots/index.html --- a/tornado-plots/index.html Thu Nov 02 00:16:56 2023 -0400 +++ b/tornado-plots/index.html Sun Nov 05 12:37:35 2023 -0500 @@ -9,14 +9,16 @@

The graph is 100kb wide.

The graph is 100kb wide. The histogram is frequency of reads.

cells: number of cells in the population.
synthesis time: simulated synthesis time (seconds).
firing model: whether to simulate exponential firing (uses firing half-life), or linear firing (uses firing probability).
firing half-life: the half-life of the origin with respect to firing (seconds), e.g. a value of 5 means that this origin will fire in half of the cells after 5 seconds. Only used when exponential firing is selected.
firing probability: the probability this origin will fire each second. Only used when linear firing is selected.
firing probability: the probability this origin will fire each second. + +
ori: position of the origin.
left/right fork rates: how fast each fork progresses (nt/second).
rate noise: how much noise to add to each fork's rate (per fork, proportion of total rate).