# HG changeset patch # User Steve Losh # Date 1711566254 14400 # Node ID fdcc1c684cd9b2fed64dbe5a1f016a58d4f1d9bc # Parent 8f1af69d38e3e731beb94f504a13fb348af8b4de Update diff -r 8f1af69d38e3 -r fdcc1c684cd9 README.markdown --- a/README.markdown Tue Mar 19 16:12:08 2024 -0400 +++ b/README.markdown Wed Mar 27 15:04:14 2024 -0400 @@ -225,3 +225,70 @@ Did some more StumpWM yak shaving between classes, fixing up broken mode line/sensor support, etc. +## 2024-03-20 + +In the lab most of today except for journal club at 3. + +Watched the (very short) BI529 video for tomorrow. + +BI603. + +## 2024-03-21 + +BI529, multiple sequence alignment. + +Wanted to clean out my downloads folder, but haven't gotten around to getting +a nice graphical file manager on this laptop. Decided to try out `ranger` and +it was… fine. `space` to mark files, then `:delete` to remove them. Previews +are ugly but usable. + +## 2024-03-22 + +BI545, this time about single-nuclei 10x Multiome. Lab is at +, +and there's a Nextflow workflow at + which might +be worth looking at if I ever decide to use Nextflow again. + +Found and + again which I came across years ago +when working at 10x, read through it because I remember them being useful back +then. + +Lunch with some CMB/BI folks. + +Finished reading through the 545 lab after meeting. + +## 2024-03-24 + +BI545 and BS522 homework. + +## 2024-03-25 + +Looked for a way to queue up commands to run serially. Initially found a bunch +of people recommending `at` and `batch` which absolutely do not do that, cool. +Eventually I found `nq` () which uses +a cute and/or horrifying strategy (the process backgrounds and hangs `flock`ed +on sequential sentinel files, lol), so I'll give that a try. For example, to +`curl` whatever's on your clipboard, something like this (in bash) can work: + + X=`pbpaste` nq -c bash -c 'curl --remote-name -L "$X"' + +The `pbpaste` evals immediately, and the string it produces is used later when +actually running, which is what you want. Neat. + +## 2024-03-26 + +BS522. + +BI529. Tree search. Implemented DFS and BFS PAIP-style for fun, then also did +them the way they wanted. + +BI545, initial presentations. All but one group came in under time, thankfully, +so it wasn't too painful. + +PIBS800. Part 2 of how to give a talk. + +## 2024-03-27 + +BI603.