# HG changeset patch
# User Steve Losh <steve@stevelosh.com>
# Date 1580609506 18000
# Node ID 14fa5850fa5cfb37e834c9d88cff377d50f61521
# Parent  c42b3cb28bc0d6145e2c2c2150307fd9fab0cbbd
Update

diff -r c42b3cb28bc0 -r 14fa5850fa5c README.markdown
--- a/README.markdown	Sat Feb 01 15:22:36 2020 -0500
+++ b/README.markdown	Sat Feb 01 21:11:46 2020 -0500
@@ -333,3 +333,14 @@
 Attempted to figure out how to acquire MS Word for the class.  Apparently
 there's a web version of Word now?  If I can use that, at least I won't have to
 spin up a full Windows VM to write the papers…
+
+Installed `sra-toolkit` from Ubuntu's repository.  Unfortunately it doesn't seem
+to come with `fasterq-dump`, only the older `fastq-dump`, at least according to
+`dpkg-query -L sra-toolkit`.  Installed the latest binary from their site
+instead.
+
+Poked around at both `fastq-dump` and `fasterq-dump`.  `fasterq-dump` seems more
+documented and user friendly, and is definitely faster.  The biggest speedup
+came from telling it to use RAM as its temporary filesystem with `-t /dev/shm`,
+which cut the time down to 1/3.  Guess all this RAM *is* actually good for
+something.